../../tmp/servers/virsirnadb/1125737745
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1211 | 1 | tgactgcagagagtgctga | 19 | |
| AF011751.1 | Hepatitis C virus strain H77 pCV-H77C polyprotein gene, complete cds | 9557 | ................... | 9575 | 100 |
| AF011752.1 | Hepatitis C virus strain H77 pCV-H11 polyprotein gene, complete cds | 9557 | ................... | 9575 | 100 |
| AF011753.1 | Hepatitis C virus strain H77 pH21 polyprotein gene, complete cds | 9557 | ................... | 9575 | 100 |
| D89815.1 | Hepatitis C virus genomic RNA, complete sequence | 9506 | ................... | 9524 | 100 |
| AF054247.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L6S, complete | 9553 | ................... | 9571 | 100 |
| AF054248.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L2S, complete | 9553 | ................... | 9571 | 100 |
| AF054249.1 | Hepatitis C virus subtype 1b strain HC-J4 isolate pCV-J4L4S, complete | 9554 | ................... | 9572 | 100 |
| AJ238799.1 | Hepatitis C virus type 1b complete genome, isolate Con1 | 9563 | ................... | 9581 | 100 |
| AF176573.1 | Hepatitis C virus subtype 1b strain 274933RU, complete genome | 9558 | ................... | 9576 | 100 |
| AB016785.1 | Hepatitis C virus genomic RNA, complete sequence | 9496 | ................... | 9514 | 100 |
| AF271632.1 | Hepatitis C virus subtype 1a clone pHCV-1/SF9 A, complete genome | 9576 | ................... | 9594 | 100 |
| AJ278830.1 | Hepatitis C virus genomic RNA for polyprotein gene | 9568 | ................... | 9586 | 100 |
| AB049088.1 | Hepatitis C virus genomic RNA, complete genome, isolate: HCVT094 | 9574 | ................... | 9592 | 100 |
| AB049089.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT10 | 9529 | ................... | 9547 | 100 |
| AB049090.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9529 | ................... | 9547 | 100 |
| AB049091.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT14 | 9505 | ................... | 9523 | 100 |
| AB049095.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT16 | 9543 | ................... | 9561 | 100 |
| AB049101.1 | Hepatitis C virus gene for polyprotein, complete cds, isolate: HCVT22 | 9556 | ................... | 9574 | 100 |
| AF333324.1 | Hepatitis C virus type 1b polyprotein mRNA, complete cds | 9545 | ................... | 9563 | 100 |
| AF356827.1 | Hepatitis C virus subtype 1b isolate HCV-S1, complete genome | 9567 | ................... | 9585 | 100 |
| AY045702.1 | Hepatitis C virus isolate HCR6, complete genome | 9569 | ................... | 9587 | 100 |
| AF139594.2 | Hepatitis C virus subtype 1b strain HCV-N, complete genome | 9574 | ................... | 9592 | 100 |
| AB080299.1 | Hepatitis C virus genomic RNA, complete genome, isolate:M1LE | 9545 | ................... | 9563 | 100 |
| AY460204.1 | Hepatitis C virus from Shanghai, complete genome | 9535 | ................... | 9553 | 100 |
| D84263.2 | Hepatitis C virus (isolate VN235) genomic RNA, complete genome | 9573 | ................... | 9591 | 100 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 9559 | ................... | 9577 | 100 |
| D84264.2 | Hepatitis C virus (isolate VN405) genomic RNA, complete genome | 6886 | .a.........gc....._ | 6903 | 78 |
| D84265.2 | Hepatitis C virus (isolate VN004) genomic RNA, complete genome | 9580 | ................... | 9598 | 100 |
| AB191333.1 | Hepatitis C virus genomic RNA, complete genome, strain:0 | 9545 | ................... | 9563 | 100 |
| DQ071885.1 | Hepatitis C virus subtype 1b polyprotein mRNA, complete cds | 9563 | ................... | 9581 | 100 |
| AB249644.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9517 | ................... | 9535 | 100 |
| EF621489.1 | Hepatitis C virus subtype 1a strain HC-TN, complete genome | 9557 | ................... | 9575 | 100 |
| AB426117.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9517 | ................... | 9535 | 100 |
| AB435162.2 | Hepatitis C virus subtype 1b genomic RNA, complete genome, hiroshima | 9579 | ................... | 9597 | 100 |
| EU857431.1 | Hepatitis C virus subtype 1b isolate Whu, complete genome | 9561 | ................... | 9579 | 100 |
| AB442219.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9545 | ................... | 9563 | 100 |
| AB442220.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9545 | ................... | 9563 | 100 |
| AB442221.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: KAH | 9545 | ................... | 9563 | 100 |
| AB442222.1 | Hepatitis C virus subtype 1b genomic RNA, complete genome, clone: 1B- | 9548 | ................... | 9566 | 100 |
| FN435993.1 | Hepatitis C virus subtype 1b complete genome, isolate EU1, genomic RN | 9571 | ................... | 9589 | 100 |
| AB520610.1 | Hepatitis C virus subtype 1a genomic RNA, complete genome, strain: HC | 9556 | ................... | 9574 | 100 |
| GU133617.1 | Hepatitis C virus subtype 1b, complete genome | 9604 | ................... | 9622 | 100 |
| D84262.2 | Hepatitis C virus (isolate Th580) genomic RNA, complete genome GCCAGC | 9586 | ................... | 9604 | 100 |
| AF009606.1 | Hepatitis C virus subtype 1a polyprotein gene, complete cds | 9604 | ................... | 9622 | 100 |
| D85516.1 | Hepatitis C virus genomic RNA, complete cds | 9493 | ....c.............. | 9511 | 94 |
| AJ132997.1 | Hepatitis C virus, complete genome, isolate HCV-AD78P1 | 9491 | ....c.............. | 9509 | 94 |
| AF169002.1 | Hepatitis C virus subtype 2a isolate NDM228, complete genome | 9618 | ................c._ | 9635 | 89 |
| AF169003.1 | Hepatitis C virus subtype 2a isolate G2aK1, complete genome | 9651 | ................c._ | 9668 | 89 |
| AF169004.1 | Hepatitis C virus subtype 2a isolate G2aK3, complete genome | 9611 | ................c._ | 9628 | 89 |
| AF169005.1 | Hepatitis C virus subtype 2a isolate NDM59, complete genome | 9658 | ................c._ | 9675 | 89 |
| AB030907.1 | Hepatitis C virus (isolate JPUT971017) genomic RNA, complete genome | 9612 | ................c._ | 9629 | 89 |
| AB047639.1 | Hepatitis C virus (isolate JFH-1) genomic RNA, complete genome | 9636 | ................c._ | 9653 | 89 |
| AB047640.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-1 | 9632 | ................c._ | 9649 | 89 |
| AB047642.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-3 | 9636 | ................c._ | 9653 | 89 |
| AB047643.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-4 | 9599 | ................c._ | 9616 | 89 |
| AB047644.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-5 | 9649 | ................c._ | 9666 | 89 |
| AB047645.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-6 | 9641 | ................c._ | 9658 | 89 |
| EU363761.1 | Recombinant Hepatitis C virus H77C/JFH1, complete genome | 9624 | ................c._ | 9641 | 89 |
| AF177036.1 | Hepatitis C virus subtype 2a strain HC-J6CH clone pJ6CF, complete gen | 9669 | ................c._ | 9686 | 89 |
| AB047641.1 | Hepatitis C virus gene for polyprotein, complete cds, clone:JCH-2 | 9617 | ............t...c._ | 9634 | 84 |
| AY746460.1 | Hepatitis C virus genotype 2a polyprotein gene, complete cds | 9647 | ............t...c._ | 9664 | 84 |
| FJ462440.1 | Hepatitis C virus isolate QC93, complete genome | 6880 | ............c...a._ | 6897 | 84 |
| AY878650.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 6869 | .c..........c...c._ | 6886 | 78 |
| AY878651.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 8546 | .c.t...t.........._ | 8563 | 78 |
| DQ278891.1 | Hepatitis C virus subtype 6k isolate KM45, complete genome | 6885 | .c..........c...c._ | 6902 | 78 |
| DQ278893.1 | Hepatitis C virus subtype 6k isolate KM41, complete genome | 8578 | .c.t...t.........._ | 8595 | 78 |
| EU246933.1 | Hepatitis C virus strain D33 polyprotein gene, complete cds | 6861 | .a.........gc....._ | 6878 | 78 |